
Image from ScienceNOW, July 14, 2005
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Carlos Bustamante
Jason Mezey
Andy Clark
Chip
Aquadro
Lee Kraus
Steve Tanksley
Michael Stanhope
Katie Pollard
Webb Miller
David Haussler
Gill Bejerano
Rasmus Nielsen
PHAST (PHylogenetic Analysis with Space/Time models) includes several phylo-HMM-based programs and related tools for phylogenetic analysis and functional element identification. See the PHAST home page for details.
This software package includes code to enumerate sorting reversals for signed permutations, and to compute reversal (inversion) medians (see related publications). RevMed is freely downloadable under the terms of the GNU General Public License, but GRAPPA is required for installation. Parts of RevMed have been incorporated into GRAPPA as of version 1.6.