c670d56a0c187fdeada6e772ea844330 *DESCRIPTION
9b9e467c78238c3da637a38c75c13f54 *INDEX
971ae5e4d1929a1448901fac3eecbb95 *Meta/Rd.rds
ca728c0c9cf8e0e2e788ffbe57bae1a6 *Meta/hsearch.rds
d5caf11a5f25c0145a4d9f9aad9f1240 *Meta/links.rds
553407155f7c23f2356674d77024eca0 *Meta/nsInfo.rds
ff99bfc6bf68b49eea2e3ed59fb05224 *Meta/package.rds
8203c65226609c1c473a01602c5a81a1 *Meta/vignette.rds
22809d0a929422c0ecb78961e03f781d *NAMESPACE
240d28d145138a75831809e31a480bad *R/rphast
bcb9a77c5c044785850b7a4f2bc8faa7 *R/rphast.rdb
a595394a7c8f3daf5d8091d845c5e15d *R/rphast.rdx
55abf569404b8fb30b1b63df531b960c *doc/index.html
d58175fae7816dc03af4b769e6ef45c1 *doc/vignette1.R
99e2217722fcf558ad569c0fc001abb4 *doc/vignette1.Rnw
f35954d6aa280ccee439fa996da941d6 *doc/vignette1.pdf
bd6a318ebff560d6a9384702f4a03880 *doc/vignette2-source.pdf
71156083d5f1866172be9a798753b440 *doc/vignette2.Rnw
f51bd52b9dd31278ccfe06fd0f8b7d02 *doc/vignette2.pdf
50cce1eda2d25c9ddbfe3105add76717 *doc/vignette3.R
521fb48ee4b1a6f5434b258e93a9b9fe *doc/vignette3.Rnw
2c8fc7ee7026dda2083f5f2a2f859d20 *doc/vignette3.pdf
3a39bed7873e175bf0b8ba968436a4aa *examples/ENr334.maf
bf7cdff23a6a89832f7d8831a5295fa0 *examples/add-UTRs-feat.R
7204f31166d72f8c7d8a93d28ad6df25 *examples/add-introns-feat.R
9860952af95d8aa9b18843122e549d5d *examples/add-signals-feat.R
3634205418b5432de1e9d75f0fcd975c *examples/alphabet-msa.R
d9ea663b54cf97d0afc70ee26fd6823e *examples/as-data-frame-feat.R
bab0fe5dc62c2fa75664d8a54aba2863 *examples/as-list-tm.R
fb1379513a93f6d0970e704ae0ff592d *examples/as-pointer-feat.R
255a2dd5b970fdbfbd96792f60ad1134 *examples/as-pointer-msa.R
4a6c336aa14dcab39241348b7af124e3 *examples/as-track-feat.R
184e4a98c389b6ef83aa1eb9497f34c6 *examples/col-expected-subs-msa.R
fdfcce03cb5fbd9c091948f83924d5df *examples/coverage-feat.R
6d9ca0a3cb62f48790a7d2bc338e6f7e *examples/dim-feat.R
63c4fd725bb8e82f6fec93629ff2e42c *examples/expected-subs-msa.R
96d8fd3852bb3a294b9657d3d56c8dcf *examples/feat.R
56f7aa765b9f596ebfedef719a7fe840 *examples/fix-semicolon-tree.R
d76292917450b388046c19d1a7293047 *examples/fix-start-stop-feat.R
7bebb54d6faf5ce2279ab95df311bc15 *examples/from-pointer-msa.R
7a064b83f1385f8dce429e5bb5c4f705 *examples/get4d-msa.R
2dc56aa8a71d7fe0d882da993d32e1ef *examples/guess-format-msa.R
dc7d1d5a9317a295175b631c30aa6678 *examples/hmm.R
8301eb4142815df989e9ded86c2d55b7 *examples/informative-regions-msa.R
5ef5aeb935be9a4ffd6fc430d9e3cc31 *examples/is-format-msa.R
7c82d46896ac99a2ce04f2e589b3ddad *examples/is-ordered-msa.R
5a3f542faf48515029ec7e52e9b7168a *examples/is-subst-mod-tm.R
64ec5b1c1b5ba1552348c0e3bfee9eee *examples/label-branches.R
ab5bbf490d08c758432ca57bf2b121ec *examples/label-subtree.R
469ba8ab53e25a7f953ff13515ccb187 *examples/likelihood-msa.R
ed136341b18747a79d5c4864a3376459 *examples/mod-backgd-tm.R
523a64afbc115b790fb8f6ecc7867bcb *examples/msa.R
4e65b576807c575f72beecd6c0ff60fe *examples/name-ancestors.R
643cabfdbc999d4c527509a40098e097 *examples/names-msa.R
458348273074276c3ec2cd6075cf30e7 *examples/ncol-feat.R
ebdbe87371a9a73778b7f3a1966cc614 *examples/ncol-msa.R
0dbcff9e9c4c9d7a128c4a8148514f1c *examples/nrow-feat.R
3e279518193dabc501649c1f6c7029fc *examples/nrow-msa.R
c92a324603288d83156cf42824d5780c *examples/numnodes-tree.R
9440b1f9cb484a0a8e742b6f23ae7ca6 *examples/offset-msa.R
fe9eb35d9dd05e738a398796de75cead *examples/overlap-feat.R
833326894264610f1f27678b0cef07b2 *examples/phastCons.R
3c45b230aa6a08199b81b60b74b6ef6d *examples/phyloFit.R
f58d810eab474c8e502b2edee09e4636 *examples/phyloP-prior.R
3f707a200c932aa94c968342ae8993ae *examples/phyloP.R
f423fc7c95f0fde9c4130d19f0649133 *examples/plot-altmodel-tm.R
5f5bd53dd98e351c0c6418748f4b805c *examples/plot-feat.R
36f0c0bac99f2b30c3f9f4abe30fd9dc *examples/plot-gene.R
95d10a0801ff4e789cb9d40c9563a2c4 *examples/plot-msa.R
15147c303dbbea9d7539ead1c6792e97 *examples/plot-tm.R
72485614898979c4a89fc192e8a6257a *examples/postprob-msa.R
9fcd552a752d5db5345cd8c2fb5813f8 *examples/print-msa.R
fd394b3bf694b7d31340f37caef0d6fa *examples/print-tm.R
bfef486197aa092fac27e9ca1ade29b0 *examples/prune-tree.R
eda8c81e7661743f1f5cf64a6fd56338 *examples/read-feat.R
ef39f9cd8296a618a4db556e96b89313 *examples/read-hmm.R
9316f9cb491eddde6e55a1241e007a72 *examples/read-msa.R
29560d779f85b1ddd51e424438e566bb *examples/read-newick-tree.R
cf88237a3ae266e80cfa17e20bdb2cd5 *examples/read-tm.R
0adff051c15fec0ce19fb32c8ded2ba2 *examples/reflect-phylo-hmm.R
305d333da599e1e47cb17e0a70b4da95 *examples/rename-tree.R
cccf0183c0b582ed8d0ca944cae9d2a2 *examples/rescale-tree.R
3e31ce4f60278c3438e54d672f4ea5f3 *examples/sample-msa.R
eb0b5e912881e342bf9fe074e8148929 *examples/score-hmm.R
a2fd093ef4329444f5a2d478290a5dac *examples/simulate-msa.R
65a20dd5809234208d12b6564afdea22 *examples/split-by-feature-msa.R
b740ac243603c415e3c89d66dedf4e83 *examples/square-bracket-assign-msa.R
8ca22860db154415a95a3afd2b94de67 *examples/square-bracket-msa.R
df1df0e4ceee079d284a4bfb90b1d647 *examples/strip-gaps-msa.R
136e6130c3aeb227baade1e15286e64c *examples/sub-msa.R
5f54eaa9b41a8be5f2590b9d9481e4b4 *examples/subst-mods.R
2a47f9893c63a7d2a0101be34dff8cff *examples/subtree.R
e01f324b7308d4a38742e4d2ac9314a5 *examples/summary-feat.R
764d36dd5769175c957607d90ef515b4 *examples/summary-msa.R
a9ee25a642d460e47c2df5616e9e97ee *examples/summary-tm.R
b04d2689b4002e7c02f27778599f4ba3 *examples/summary-tree.R
303c21d0b8b1d8786699d0eae67580d2 *examples/tagval-feat.R
4c24648e902f01a695540cbd1952d11f *examples/tagval.R
d3c92646265cb32939fcff58cedb443b *examples/tm.R
175ed18cbe4b27bb24b48bf8140f5ec2 *examples/total-expected-subs-msa.R
fbf239d058ed24b5616f6bedf220da39 *examples/write-feat.R
142c2d7e63888822c09e88505a26cb80 *examples/write-hmm.R
287facafdc200893294374dda32f399f *examples/write-msa.R
459a35b816d91bed1622ade604544622 *examples/write-tm.R
8383bc227c5b4aea9e300b7d9abb5f13 *examples/write-wig-feat.R
8b5aae3b4c3a460f381a3d6ad81c9107 *examples/write-wig.R
126644bc8398574d82158c0d66e76bb6 *extdata/NRSF.zip
9a22005ed49da964585926751bf98af7 *extdata/examples.zip
f824e5f66849380939ec8348bdb21cdb *help/AnIndex
a65bf1573a5abaffd983b76cb722c9fa *help/aliases.rds
df2c3cb2042892064f6bcfded725ebf9 *help/paths.rds
5bba090b7824bb9c0824b92ea2028a3b *help/rphast.rdb
40fe62d9c051f9597e5fe5dae20aaec6 *help/rphast.rdx
d7370eb1b50a30df3185b4c312281f38 *html/00Index.html
444535b9cb76ddff1bab1e1865a3fb14 *html/R.css
fa837561cfbedff6db95a4442d13f50f *libs/i386/rphast.dll
a6a0ea1bd595687b5a82028d38bfa7a0 *libs/i386/symbols.rds
f7d4ec046347589a62cb46ec557c76c9 *libs/x64/rphast.dll
1889799d7169b8de90b09af62b3f1285 *libs/x64/symbols.rds
