dme-mir-960

No changes

This miRNA belongs to the dme-mir-959 - 964 cluster
This miRNA appears confidently lost within D. virilis alone.
- The D. virilis ortholog could not be found by searching D. virilis trace data nor the D. virilis assembly.
- The D. virilis ortholog does look confident because several, long trace reads span the supposed location where this cluster should reside within D. virilis:
- It should be noted that the adjacent miRNAs in this cluster, mir-959 and mir-961, have confidently lost D. virilis orthologs as well.

Uncorrected

dme-mir-960

Species	Coordinate	Alignment
dm3	chr2L:5641048-5641170 +	TATC---G-----TA------------CCGCCCAC---------------------G---GGTTTTGTACCACATTCTGAGTATTCCAGATTGC-ATAGCTTTGTGCTAC------TATTGCTATACGGTCTGGGACACTTTTAACATGGTATCAA-ATCAG---------ATTCA----------------CCTAATAG
droSim1	chr2L:5434134-5434256 +	CATC---G-----TC------------ACGCCCAC---------------------G---GGTTTTGTACCACATTCAGAGTATTCCAGGTTGC-ATAGCTTTGTGCTAC------TATTGCTGTACGATCTGGGACACTTTTAACATGGTATCAA-ATCTG---------ATTCC----------------CCCAAACG
droSec1	super_5:3718789-3718911 +	CATC---G-----TA------------CCGCCCAC---------------------G---GGTTTTGTACCACATTCTGAGTATTCCAGATTGC-ATAGCTTTGTGCTAC------TATTGCTGTACGATCTGGGAGACTTTTAACATGGTATCAA-ATCTG---------ATTCC----------------CCCAAAGG
droYak2	chr2L:13552137-13552259 -	CATC---G-----CT------------TCGCCCGC---------------------G---TGTTTTGTACCAGATTCTGAGTATTCCTGATTGC-ATAGCTTTGGCCTTT------GATTGCTATACGGTCTGGGACACTTTTAACGTGGTATCAA-ATCTG---------ATTCA----------------ACCGAAGG
droEre2	scaffold_4929:5729522-5729643 +	CAAC---G-----CA------------CCGCCCGC---------------------G---TTTTTTGTGCCAGATTCAGAGTATTCCAGATTGC-ATAGCTTTGGGCTTT------GATTGCTATACGGTCTGGGACACTTTAAACGTGGCATCAA--TCCT---------ATTCA----------------ACTGATGG
droAna3	scaffold_12916:11084824-11084972 +	TATC---G-----GCCAATAGGCCAATTAACCCGGACC---A------ATCAATATG---AGTTTTGTGCCAGATTCTGAGTATTCCTGATTGC-ATAGCTCTGTGTTGT------GACTGCTATACGGTCTGGGACACTTCTAACATGGCATCAA-ATCTG---------TGTCAAC--------------GGCAGCAG
dp4	chr4_group4:3182464-3182586 -	TGTG---G-----GT------------GTGCGTGT---------------------GTGCGGGTGTGTGCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAATATCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCC--------------------A----------------CTAAAGAC
droPer1	super_10:2201395-2201525 -	TATACACGTAAATGT------------GTGTGGGT---------------------GTGCGGGTGTGTTCTATATTCTGAGTATTGCCTCCTGTTGTAGTTGTGGAATATTGAAATATCAACTATACGGTTCGGAATCCTCTAAATATGGCAGCC--------------------A----------------CTAAAGAC
droWil1	scaffold_180708:8626131-8626297 -	TAAG---A-----AT------------TAACTTTGAATTGGAAACGATATTGAAA-T---GAATTTATGCTAAATTCTGAGTATTCCTGATTGC-ATAGTGTGTATTTGA------TACTACTATACGGTCGGGGAAACTTTTAACATGGCCCAAA--TGATAAATGACAGTGACAATGAAAAAGAAAATACCAAAACAG
droVir3	Unknown	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6500:14018206-14018306 +	TAA-----------------------------------------------------------------GTCATGCTTTGAGTATTCCTTATTGC-ATAGTTTAC--ATAT------AATTACTATACAGTCTGGAGCACTTAAAGTTGGGCATAGACAACCG---------AACAA----------------CTTAGGAG
droGri2	scaffold_15252:3146997-3147109 +	TGTT---G-----AT------------TGGCCTTG---------------------G-------TTATGCTAAATTCCAAGTATTCCTTATTGC-ATAGTTTATAAT--T------GAATACTATACAATCTGGCGTTCTTAGAATTTGTCATAAG-AC-------------TTCA----------------CATAACAA