dme-mir-306

This miRNA belongs to a cluster which includes dme-mir-9c, dme-mir-306, dme-mir-79, and dme-mir-9b.
Changes
- The reported D. simulans ortholog reported in the 12-way alignment is wrong as shown below:

The correct ortholog was found in its entirety in 6 of the 7 strains, and partially found in md106.

>dme-mir-306-dm3
GTGAATAGTTTAAAAGTCCACTCGATGGCTCAGGTACTTAGTGACTCTCAATGCTTTTGACATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTGGGACATAATCTACAAATAA
>zdv96e12.b1:525-640
GTGAATAGTTTAAAAGTCCACTCGATGGCTCAGGTACTTAGTGACTCTCAATGCCTTTGACATTTTGGGGGTCACTCTGTGCCTGTGCTGCCAGTGGGACATAATCTACAAATAA

This miRNA lie in the same intron of the grp gene as mir-79 and mir-9b, and one intron downstream of mir-9c. The genome browser net track shows that this region's alignment with D. simulans is ambiguous:

Flybase also does not report an ortholog for grp in D. simulans, however one exists for D. sechellia (GM17194).

Corrected alignment

dme-mir-306

Species	Coordinate	Alignment
dm3	chr2L:16698389-16698503 +	GTGAATAG-TTTAAA------AG--------------TCCACTC-G-----ATGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACATA-ATCTACA----AATA-------------A
droSim1	zdv96e12.b1:525-640 +	GTGAATAG-TTTAAA------AG--------------TCCACTC-G-----ATGGCTCAGGTACTTAGTGACTCTCAAT--------GCCTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACATA-ATCTACA----AATA-------------A
droSec1	super_7:345406-345520 +	GTGAACAG-TTTAAA------AT--------------TCCACTC-G-----ATGGCTCAGGTACTTAGTGACTCTCAAT--------GCCTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACATA-ATCTACA----AATA-------------A
droYak2	chr2R:4404548-4404662 -	GTGAAAAG-TTTTAA------AG--------------TCCACTC-G-----GTGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTAGGACATA-ATCCACA----AATA-------------A
droEre2	scaffold_4845:19768040-19768155 +	GTGAATAG-TTTAAG------TG--------------TCCACTC-G-----GTGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTTGA--CATTTTGGGGGTCACTCTGTGCCTGTGCTG-----CCAGTGGGACGCA-ATCAACA---AAATA-------------A
droAna3	scaffold_12916:15864848-15864962 -	GTGAAAGT-GCCAGA------AG--------------TCCACTT-G-----GTAGCTCAGGTACTTAGTGACTCTCAAT--------GCATTTGA--CATTTTGGGAGCCACTTTGTGCCTGGGCCA-----TCAGTGCGACTAT-ATCTTCT----ATTA-------------A
dp4	chr4_group3:8443802-8443917 +	GTGATTTA-TCTACA------AG--------------CACACTTTG-----CCGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGA--CATCTTGAGAGTCTCTCTGTGCCTGCACTG-----GCGGTGGTGCAAC-TGCAACG----ATTA-------------A
droPer1	super_1:9894921-9895036 +	GTGATTTA-TCTACA------AG--------------CACACTTTG-----CCGGCTCAGGTACTTAGTGACTCTCAAT--------GCTTTCGA--CATCTTGAGAGTCTCTCTGTGCCTGCACTG-----GCGGTGGTGCAAC-TGCAACG----ATTA-------------A
droWil1	scaffold_181132:873705-873839 -	GTGACTATACAAAGTGATACGAG--------------TTATCTCTGCCTAAACAGCTCAGGTACTTAGTGACTCTCAAA--------GAATATATATAGACTTGAGAGACGCTCTGTACCTAGACTGTTGTGTCTGCGGAATGTC-AACATCA----TGTG-------------T
droVir3	scaffold_12963:12863192-12863320 -	GTGCTG--------A------ACTC-CTCCCGCCCTGCACACCC-C-----GCTGCTCAGGTACTTAGTGACTCTCAATCATCTATTGCTTTGCA--TACCTTGAGGGTCGCTCTGTGCCTGTGCCG-----CCTGTGCTGCACA-ACCAACG----ACGA-------------G
droMoj3	scaffold_6500:7201931-7202062 +	ATTCATGA-TGTCC-------AG--------------CACACGC-T-----GCAGCTCAGGTACTTAGTGACTCTCAATCACATATTGCTTTGCA--TACTTTGAGGGTCGCTCTGTGCCTGTGCCG-----CCCGTGTTGCACACAGCCACA----CA---ATTGTGA-ATTCG
droGri2	scaffold_14978:830883-831041 +	GTGTTAAA-TGTGGAAAAACCAATCCAATCCG--CTGCACACGT-T-----GCTGCTCAGGTACTTAGTGACTCTCAATTCAACATTGTATTGCA-CGCCTTTGAGGGTCGCTCTGTGCCTGTGTTG-----CACGTGTTGCATT-CACACCATCCGAGTGATTTGTGTCCTTTG