ID:

dme-mir-9371

Coordinate:

chr3R:5814842-5814902 +

Confidence:

Novel miRNA

Type:

3pUTR

[View on UCSC Genome Browser]

Legend:

mature

star

mismatch in read

Predicted structure

-39.5	-39.5	-39.4

Sense Strand Reads

TCAAACAAACAAACAAACAAATCAAAATGAAACAATCGGAGGTGCTGCAGAAATCACTTTGCTTGGAATTCACATTGATGTACGTAAGAATTCATCACGAAGTGGTTTCTGTGTTGCCTCCGATTGAAAGCAGAATATTCAAATGAAAACCTAAAAATATG *********************************(((((((((.((((((((((((((((....((((((................))))))....)))))))))))))))).)))))))))..**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM628271 r2d2[1] ovary total RNA	GSE24545 CS ovary total RNA	GSM628272 ago2[414] ovary total RNA	GSM609232 r2d2[1] ovary total RNA	GSM379056 Krimp Heterozygote	GSM379064 Vasa Mutant	GSM379065 Zuc Heterozygote	SRR014278 Ovary_rep1_w1118(fem)_x_Har(male)_F1	GSM609231 ago2[414], ovary, AGO1IP AGO1	SRR298536 strain: vret148-60/TM6genotype/variation: Vret Heterozygote	SRR029608 total small RNAs from hen1 heterozygous flies	SRR014276 Ovary_rep1_NA(fem)_x_Har(male)_F1	V148 mbn2 cellline	SRR317114 genotype: fs(1)yb_72/Fm6 or fs(1)yb_4/Fm6stage: from 5-6 days old flies	GSM609230 CS,ovary,AGO1IP AGO1	SRR065801 zuc_het(H-Y)_ovaries	GSM609237 ago2[414] ovary total RNA	SRR014274 Ovary_rep1_LK(fem)_x_Har(male)_F1	SRR317117 genotype: zuc_hm27/zuc_cd761stage: from 5-6 days old flies	SRR032152 Ago1-associated small RNAs from Oregon R AGO1	GSM379057 Krimp Mutant	SRR014273 Ovary_rep1_Har_P	GSM609233 r2d2[1], ovary, AGO1IP AGO1	SRR029633 total small RNAs from hen1 homozygous flies	SRR014281 Ovary_rep1_wK(fem)_x_w1118(male)_F1	V073 mbn2 cellline	M005 ML-DmD32 cell cellline	SRR014277 Ovary_rep1_NA_P	SRR317113 genotype: CG47711-delta1/CG4771-delta1stage: from 5-6 days old flies	V144 OSC cellline	SRR014275 Ovary_rep1_LK_P	SRR014279 Ovary_rep1_w1118(fem)_x_wK(male)_F1	GSM379063 Vasa Heterozygote	SRR014280 Ovary_rep1_w1118_P	GSM379062 Squ Mutant	SRR060644 A2_ovaries_total	SRR298712 strain: bam(delta)86/bam(delta)86genotype/variation: Bam Mutant	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031692 Total small RNAs from Oregon R	V127 G2 cellline	SRR298537 strain: vret148-60/vret148-60genotype/variation: Vret Mutant	GSM379052 Aub Heterozygote	SRR317110 genotype: Df(3L)armi-delta1/TM3SbStage: from 5-6 days old flies	SRR317115 genotype: fs(1)yb_72/fs(1)yb_4stage: from 5-6 days old flies	SRR317116 genotype: zuc_hm27/Cyo or zuc_cd761/Cyostage: from 5-6 days old flies	SRR060646 yw67c23(2)_ovaries_total	SRR298711 strain: egg1473/ Df(2R)Dll-Mpgenotype/variation: dSETDB1 Mutant	GSM379053 Aub Mutant	GSM379061 Squ Heterozygote	SRR029028 untreated (mock)	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR065800 zuc_H-Y_ovaries	GSM379058 Piwi Heterozygote	GSM609234 CS male total RNA	GSM379067 SpnE Mutant	SRR317111 genotype: DF(3L)armi-delta1/DF(3L)armi-delta1Stage: from 5-6 days old flies	SRR317112 genotype: CG4771-delta1/TM3Sbstage: from 5-6 days old flies	SRR031696 Ago1-associated small RNAs from Oregon R AGO1	GSM379066 Zuc Mutant	V091 fGS/OSS total � cellline	V085 CME W2 wing disc cellline	GSM609224 female, one day	GSM379051 Armi Mutant	GSM399101 kc167 cell cellline	GSM609223 male, one day	SRR014282 Ovary_rep1_wK_P	GSM609219 GM2 cell cellline	GSM609238 embryo 14-24hr	SRR031697 Total small RNAs from dcr-2 heterozygous flies	GSM379060 SpnE Heterozygote	GSM280082 WT ovaries (18-29nt)	GSM379050 Armi Heterozygote	GSM379059 Piwi Mutant	GSM609250 ML-DmD32 cell cellline	GSM399107 male body #2	GSM322533 female head #1	GSM240749 female head	GSM379054 Flam Heterozygote	GSM379055 Flam Mutant	SRR060650 A1_testes_total	GSM609222 ML-DmBG1-C1 cellline	GSM609225 ML-DmBG3-C2 cellline	V032 S1 cell cellline	SRR014271 Embryo_0-2hrs_rep1_w1118_0_2hr_Emb	GSM322543 male head #1	SRR001339 WT_females_non-beta-eliminated	V146 S1 cell cellline	GSE24544 dcr-2[L811fsX] ovary total RNA	V034 ML-DmD16c3 cell cellline	GSM609220 ML-DmD21 cell cellline	M006 ML-DmD32 cellline	SRR097866 Drosophila S2-NP cells	GSM371638 S2-NP cellline	GSM609247 heat female head	SRR065155 Piwi bound piRNAs from tj GAL4 > RNAi-fs(1)Yb ovaries	V147 1182-4H cell cellline	GSM360262 0-2d pupae	GSM399106 female body #2	GSM286603 female body	SRR001347 ago2_untreated	SRR001349 heterozygous_dcr-2_untreated	SRR060645 yw67c23(2)_testes_total	GSM399110 KC-48 #2	GSM609243 KC+48 #1	GSM385744 OSS_s2 cellline	GSM385748 OSS_s6 cellline	GSM385821 OSS_s7 cellline	GSM385822 OSS_s8 cellline	SRR341115 transfected with dsRNA targeting nibblercell type: Schneider 2 (S2) cellsoxidation	SRR031693 2'-O-methylated small RNAs from Oregon R	SRR031702 2'-O-methylated small RNAs from r2d2 heterozygous flies	GSM609251 aged female head	SRR060653 hs-Penelope_ ovaries_total	GSM609236 dcr-2[L811fsX], ovary, AGO1IP AGO1	V131 ML-DmD16-c3 cellline	SRR341118 transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation	V008 S2-DRSC cellline	SRR029032 r2d2 knockdown	SRR014270 Embryo_0-2hrs_rep1_NA_0_2hr_Emb	GSM360257 1st instar #2	GSM467731 Dmel_loq_sRNAseq	SRR001341 WT_males_non-beta-eliminated	SRR001345 ago2_non-beta-eliminated	SRR031694 2'-O-methylated small RNAs from Oregon R	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR060651 A2_ovaries_Ago3 AGO3	SRR065804 Piwi-IP_zuc_H-Y_ovaries	SRR060652 hs-Penelope_testes_total	GSM609221 1182-4H cell cellline	GSM609227 CMEW1 Cl.8+ cell cellline	V031 GM2 cell cellline	GSM399100 Kc167 cell cellline	V130 ML-DmBG3-c2 cellline	V036 ML-DmD20c5 cell cellline	GSM609248 ML-DmD9 cell cellline	GSM609242 s2+48 #2	SRR032093 ago1 knockdown	GSM280088 S2cell (AGO1IP) AGO1	SRX247212 AGO1-IP from S2-R+, FLAG-HA-AGO2 AGO1	GSM343833 S2R+ cell cellline	GSM286611 6-10h #2 (11)	SRR014272 Embryo_0-2hrs_rep1_wK_0_2hr_Emb	GSM609239 IR-	GSM322219 2-4day pupae #1	GSM360260 0-1d Pupae (w)	GSM467729 Dmel_wt_sRNAseq	GSM286602 male body	SRR351332 age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: control wild type (w, 5905)	SRR351333 age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: nbr[f02257]	GSM180328 adult heads (female heads, male heads)	GSM312995 WT, oxidized	GSM313160 dcr-2 homozygous, oxidized	SRR031700 2'-O-methylated small RNAs from dcr-2 homozygous flies	GSM280084 loqs-/- ovaries (18-29nt)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM275691 imaginal disc	V126 CME L1 cellline	V129 ML-DmBG1-c1 cellline	V022 ML-DmD32 cell cellline	V132 ML-DmD32 cellline	V030 ML-DmD8 cell cellline	V125 ML-DmD9 cellline	V145 S2-DRSC cellline	GSM272652 S2 -48 Biological Replicate #1	GSM361908 s2-48 Biological Replicate #2	SRR097865 Drosophila S2-NP cells	SRR097867 Drosophila S2-NP cells	SRX247213 FLAG-IP from S2-R+, FLAG-HA-AGO2 AGO2
........................................................................................AATTCATCACGAAGTGGTTTCT...................................................	22	0	1	3696.00	3696	530	326	181	155	118	122	103	105	86	87	82	92	61	48	65	71	72	63	45	61	45	48	44	48	30	41	18	34	32	37	33	33	26	32	35	29	29	33	25	13	26	26	14	8	11	25	18	23	23	19	17	14	18	11	17	7	17	13	14	17	10	8	9	8	8	5	8	3	4	10	3	9	10	0	3	4	3	7	6	5	0	4	2	0	2	3	2	1	2	4	4	3	6	2	0	1	3	2	4	1	1	2	0	0	2	4	2	2	3	2	1	1	0	0	1	2	1	3	0	0	0	2	1	0	0	1	0	1	0	0	1	2	0	2	2	2	0	0	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	1	1	1	0
..................................................AAATCACTTTGCTTGGAATTCA.........................................................................................	22	0	1	802.00	802	102	25	24	36	47	42	29	15	22	13	26	11	21	29	16	8	5	18	21	14	16	14	24	11	22	4	0	8	4	3	2	11	6	5	4	7	5	1	9	1	3	3	6	16	12	2	6	0	0	0	3	5	3	4	1	6	2	3	3	0	2	2	0	2	1	3	0	0	2	0	3	1	0	0	2	1	2	0	1	0	0	0	0	0	4	2	1	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	1	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................ATTCATCACGAAGTGGTTTCT...................................................	21	0	1	459.00	459	62	52	21	10	15	10	15	9	20	7	12	14	11	15	6	6	7	4	3	5	8	9	6	7	0	5	2	5	10	6	4	2	5	0	3	0	1	2	1	2	0	4	8	2	3	1	1	2	4	3	3	2	1	1	3	2	2	1	0	1	2	2	2	0	1	4	0	0	1	0	0	0	0	0	0	0	0	1	0	0	4	2	0	0	0	1	0	0	0	2	0	3	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATCACTTTGCTTGGAATTC..........................................................................................	21	0	1	264.00	264	51	8	5	8	12	10	14	8	8	7	4	0	12	4	5	2	3	1	10	4	12	9	0	2	9	5	0	5	2	1	5	0	1	0	0	1	1	2	1	0	2	1	2	2	2	1	0	1	0	0	0	1	0	1	0	4	0	0	0	0	0	0	0	2	0	0	0	0	2	0	2	0	0	0	1	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TCACGAAGTGGTTTCTGTGTTG.............................................	22	0	1	154.00	154	1	0	2	0	1	0	1	2	1	9	1	3	4	2	1	1	0	0	2	0	1	0	1	4	0	0	28	0	2	0	1	0	0	2	0	1	1	1	0	11	3	0	1	0	2	0	1	0	0	1	0	1	0	1	0	1	0	0	1	0	0	0	0	0	2	0	0	4	1	0	1	0	0	8	1	1	3	0	0	2	0	0	2	0	1	0	0	1	3	0	0	0	0	1	0	0	0	1	0	0	2	0	4	3	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	2	0	2	0	2	0	0	0	1	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................AATTCATCACGAAGTGGTTTC....................................................	21	0	1	108.00	108	8	9	3	3	5	5	5	3	1	2	1	3	3	0	5	2	2	1	4	0	2	2	0	0	3	4	0	1	0	0	0	0	3	0	0	0	0	0	0	0	1	1	0	0	0	2	0	0	0	3	1	2	0	1	0	0	0	0	0	0	2	0	1	0	0	0	4	0	0	0	1	0	0	0	1	2	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATCACGAAGTGGTTTCTGTGTT..............................................	22	0	1	77.00	77	5	3	4	0	0	1	0	0	2	2	1	1	1	0	3	1	1	1	3	1	0	1	0	0	0	0	4	0	0	0	0	0	1	0	0	1	0	0	0	7	1	0	1	2	0	0	0	0	0	0	0	0	1	0	0	0	1	1	1	0	0	1	1	0	0	0	0	2	0	0	0	0	0	2	1	0	0	0	0	0	0	2	1	0	0	0	1	4	1	0	2	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................AATTCATCACGAAGTGGTTTCC...................................................	22	1	1	57.00	57	13	6	7	4	0	1	1	1	1	2	3	1	1	0	2	1	0	1	0	0	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AAATCACTTTGCTTGGAATT...........................................................................................	20	0	1	28.00	28	2	0	0	2	2	2	1	2	1	0	0	0	2	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AATTCATCACGAAGAGGTTTCT...................................................	22	1	1	27.00	27	6	0	2	3	2	1	1	0	1	0	1	0	0	0	1	0	1	1	0	0	0	0	0	0	1	1	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................AATTCATCACGAAGCGGTTTCT...................................................	22	1	1	27.00	27	5	0	0	6	1	0	1	1	1	0	1	1	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AATTCATCACGAAGTGGTTTCTT..................................................	23	1	1	24.00	24	7	0	0	1	1	2	1	0	0	0	2	0	1	0	0	1	0	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AATTCATCACGAAGTGGCTTCT...................................................	22	1	1	23.00	23	3	0	2	3	0	0	1	0	0	0	1	1	0	0	0	1	0	1	0	2	0	0	0	1	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AATTCATCACGAAGTGGTTT.....................................................	20	0	1	23.00	23	4	0	0	2	1	0	0	4	1	0	2	1	1	2	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................AATTCATCACGACGTGGTTTCC...................................................	22	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AATTCATCACGAAGTGGATTCC...................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AATTCATCACGAAGTGGGTTGT...................................................	22	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TCACGAAGTGGTTTCGGTGTTG.............................................	22	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................AAATCACTCTGCTTGGAATTC..........................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................ATTCATCACGAACTGTTTTCT...................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................ATATCACTTTGCTTGGAATTC..........................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AATTCATCAAGTAGGGGTTTCT...................................................	22	3	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AAGTAATCACGAAGTGGTTTCT...................................................	22	2	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Anti-sense strand reads

TCAAACAAACAAACAAACAAATCAAAATGAAACAATCGGAGGTGCTGCAGAAATCACTTTGCTTGGAATTCACATTGATGTACGTAAGAATTCATCACGAAGTGGTTTCTGTGTTGCCTCCGATTGAAAGCAGAATATTCAAATGAAAACCTAAAAATATG *********************************(((((((((.((((((((((((((((....((((((................))))))....)))))))))))))))).)))))))))..**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V148 mbn2 cellline
................................................................................................................GTTGCCCCCGATTGAAACC..............................	19	2	1	1.00	1	0
...................................................................................GTCAGCATTCATCATGAAGTGG........................................................	22	3	1	1.00	1	0
...............................................................................GTACGTAAGAACTCATCAAAA.............................................................	21	3	1	1.00	1	0
..................................................................................CGTAAGAATTCATCACGAAGTGG........................................................	23	0	1	1.00	1	1
................................................................................TACGTAAGAGTCGATCACGAA............................................................	21	3	1	1.00	1	0
..................................................AAATCACTTTTCTTGGAATTC..........................................................................................	21	1	1	1.00	1	0
..........AAACAAACAAAGCAAAATGA...................................................................................................................................	20	1	1	1.00	1	0
.......................................AGGTTCTTCAGATATCACTTT.....................................................................................................	21	3	2	1.00	2	0
...........................................................................................................TCTGTGTTGCCTCCGCTTGAA.................................	21	1	1	1.00	1	0
..........................................................................................................TTCAGTATTGCCTGCGATTGA..................................	21	3	4	1.00	4	0
................................................................................................................GTTGCATCCGATTGACAGCAT............................	21	3	2	1.00	2	0
...............................................................TGGAATTGACCTTGATGTCCG.............................................................................	21	3	3	0.67	2	0
.........................................................................................................TTTCAGTATTGCCTGCGATTGA..................................	22	3	3	0.67	2	0
...................................................................ATACACAATGATGTACGTCAG.........................................................................	21	3	2	0.50	1	0
................ACAAATTAAACGGAAACAATCG...........................................................................................................................	22	3	4	0.50	2	0
.......................................................................................................................GCGCTAGAAAGCAGAATATTC.....................	21	3	2	0.50	1	0
............ACAAACAAATCAAACCGAAACA...............................................................................................................................	22	2	2	0.50	1	0
........................................GGTTCTTCAGATATCACTTTG....................................................................................................	21	3	2	0.50	1	0
.............................................TGCAGAAATCACCTTGCGT.................................................................................................	19	2	2	0.50	1	0
................................................................................................................................AGCAGAATCCTCAATTGAAAA............	21	3	4	0.50	2	0
..................................................................................AGTAAGAATTCATCACGAGATG.........................................................	22	3	3	0.33	1	0
....................................................................................................AGTTGTTTCTATGTTGGCTCC........................................	21	3	3	0.33	1	0
.............................................TGCAGAACTCACATTGCTT.................................................................................................	19	2	3	0.33	1	0
........................................................................................................GTTTCGGTGTTGCCTCCGG......................................	19	2	3	0.33	1	0
...................AATCAAAATTAGACAGTCGGA.........................................................................................................................	21	3	3	0.33	1	0
.........CCGACAAACAAATCAAAATGA...................................................................................................................................	21	2	3	0.33	1	0
..................................................................................................................................CAGAACATTCAAATGTATACC..........	21	3	7	0.29	2	0
...........................................................TGCTTGGACTTCATATTGA...................................................................................	19	2	4	0.25	1	0
....................................CGGAGGTGCTACAGAGAT...........................................................................................................	18	2	4	0.25	1	0
.........................................GTGCGGCAGAAAACAGTTTGC...................................................................................................	21	3	4	0.25	1	0
..................AAGTCAAAATGAAACAGTCTG..........................................................................................................................	21	3	4	0.25	1	0
.............................................................................................................................GCAAGAAGAATATTCATATGAAA.............	23	3	4	0.25	1	0
..................................................................................................................................CAGAATATTCAAAGGAAACCT..........	21	3	4	0.25	1	0
...........................................................................................ACATCACGCAGTGGTTCCTGT.................................................	21	3	8	0.25	2	0
.............................................TGCTGAAATCACTTTGCTGGC...............................................................................................	21	3	5	0.20	1	0
.........CAAACTAACAAATCAAACTGCAA.................................................................................................................................	23	3	5	0.20	1	0
......................CAAAACGCAAAAATCGGAGGTG.....................................................................................................................	22	3	5	0.20	1	0
......................................................................................AGAATTCATAACGAAGTGTAT......................................................	21	3	5	0.20	1	0
................................AAACCGGGGGTGCTGCAGAAA............................................................................................................	21	3	6	0.17	1	0
............ACAAGCAAATCAAAATGCATCA...............................................................................................................................	22	3	6	0.17	1	0
....GCAAACAAACAAACAACTCAAA.......................................................................................................................................	22	2	6	0.17	1	0
.......................................................................................................................................TATGCAAATGACAACCTAA.......	19	2	6	0.17	1	0
.............................................................................................................................GAAAGCAGAATACCCAAAGGA...............	21	3	6	0.17	1	0
.....................TCAAAATGACACAATCCG..........................................................................................................................	18	2	7	0.14	1	0
.........CAAACGAACATATCAACATGA...................................................................................................................................	21	3	7	0.14	1	0
.......AACAATCAAACAAATCAAAAG.....................................................................................................................................	21	2	7	0.14	1	0
...............AACAAATCAAAATGTACCAA..............................................................................................................................	20	2	7	0.14	1	0
.......................................AGGTGCCGCAGAAATCCATTT.....................................................................................................	21	3	7	0.14	1	0
............ACAAACATATCAAAATCAAGCAA..............................................................................................................................	23	3	7	0.14	1	0
............ACAAACAAATAAAAACGAAACA...............................................................................................................................	22	2	7	0.14	1	0
....ACAAACAAACAAACTCATCACA.......................................................................................................................................	22	3	15	0.13	2	0
.......................................CGGTTCTGCAGAAACCACTT......................................................................................................	20	3	8	0.13	1	0
........................................................................................AATTCAGCCCGAAGTGGTAT.....................................................	20	3	8	0.13	1	0
............ACAAACAAATCAAACTCAAACG...............................................................................................................................	22	3	9	0.11	1	0
...........................................................TGCTTGGACTACACATTGA...................................................................................	19	2	10	0.10	1	0
..............ACACACTTCAAAATGAAACAA..............................................................................................................................	21	3	20	0.10	2	0
............................................GTGCAGAAATCACATGGCTT.................................................................................................	20	3	10	0.10	1	0
.............................................TGCAGAAATCACGCGGCTTG................................................................................................	20	3	10	0.10	1	0
...........................................................................................................TCTATGTTGCTTCCGATCG...................................	19	3	20	0.10	2	0
....................................CGGAGGTTCTGCAGAGATT..........................................................................................................	19	3	20	0.10	2	0
.....CAAGCAAACAAACAAATCA.........................................................................................................................................	19	1	11	0.09	1	0
......................................................................................................CGGTTTCTGTGTTGCTTC.........................................	18	2	11	0.09	1	0
..................................................................................................................................CAGAATGTTCAAAGGAAA.............	18	2	12	0.08	1	0
....................................................................................................................................ACATATTCAAATGAAAACC..........	19	2	12	0.08	1	0
...AACGAACAAACAAACACATC..........................................................................................................................................	20	2	12	0.08	1	0
.........CACACAAACAACTCACAATGA...................................................................................................................................	21	3	13	0.08	1	0
..............AAACAAATCACAATGAAGCTA..............................................................................................................................	21	3	13	0.08	1	0
.....................................................................................................................................AATATTCAACTGACGACCTAA.......	21	3	13	0.08	1	0
.....................................................................................................................................AATATTAAAATGACAGCCTAA.......	21	3	14	0.07	1	0
............ACAAACAACTCAAACTCAAACA...............................................................................................................................	22	3	16	0.06	1	0
................ACAAATCAAATCGCAACAATC............................................................................................................................	21	3	16	0.06	1	0
...........AACAAGCAAAGCAAAATGAA..................................................................................................................................	20	2	17	0.06	1	0
................................................................................................ACGACGTGGTGTCAGTGTT..............................................	19	3	17	0.06	1	0
TCAAACAAACCAACGAACAAA............................................................................................................................................	21	2	17	0.06	1	0
......AAACAAACTAACAAATCAATA......................................................................................................................................	21	2	17	0.06	1	0
.........................................TTGCTGCAGAAATCGCTT......................................................................................................	18	2	18	0.06	1	0
...........................................................TGCTTGGACTGCACATTG....................................................................................	18	2	19	0.05	1	0
..........ACACCCACAAATCAAAATGA...................................................................................................................................	20	3	20	0.05	1	0
.....................................................................................................................CTCATATTGGAAGCAGAAT.........................	19	3	20	0.05	1	0
....................................................................................................................................AAATATACAAATGAATACCTAA.......	22	3	20	0.05	1	0
..........................................................................................TTCGTCACGAGGTGGTTC.....................................................	18	3	20	0.05	1	0
.......................................................................................................................TCGATAGAAAGCTGAATATTC.....................	21	3	20	0.05	1	0
...........ACCAAACAAATCACAATGT...................................................................................................................................	19	3	20	0.05	1	0
..................................................AAATCACTTTACTTAGAATTT..........................................................................................	21	3	20	0.05	1	0
......................................................................................................................................AGCTTCAAATTAAAACCTAAA......	21	3	20	0.05	1	0
.............................................................................CTGTACGTCAGAACTCAT..................................................................	18	3	20	0.05	1	0
.....CAAACCGTCAAACAAATCAAA.......................................................................................................................................	21	3	20	0.05	1	0
.............................................................................................................................................AATGAAAACCTAATCATA..	18	2	20	0.05	1	0
....................................................................................................................CCTTCGATTGAGAGCAGTA..........................	19	3	20	0.05	1	0
TCAAAGAAACAACCAAACA..............................................................................................................................................	19	2	20	0.05	1	0
............................................................................................................................................AAATGACAACCTAATCATAT.	20	3	20	0.05	1	0
...AGCAAAAAAACACACAAATCAA........................................................................................................................................	22	3	20	0.05	1	0

Generated: 08/20/2013 at 10:02 AM